Cis-meQTLs across different cancer types

In cis-meQTL analysis, we identified 8,028,964 cis-meQTLs at FDR < 0.05 and |r|>=0.3 in 23 cancer types for users to search or browse.

 

e.g., "BLCA"
e.g., "rs11047888"
e.g., "cg25763538"
e.g., "KRAS"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Methylation probe
Methylation position (hg19)
Gene symbol
Beta
t-stat
r
P-valule
Display
BLCA rs2842865 chr1:156159532 G/A cg24450063 chr1:156163899 SLC25A44 1.18 30.08 0.84 1.46E-102 Box Plot
BLCA rs2842869 chr1:156160696 A/G cg24450063 chr1:156163899 SLC25A44 1.18 30.08 0.84 1.46E-102 Box Plot
BLCA rs2842882 chr1:156165342 T/G cg24450063 chr1:156163899 SLC25A44 1.17 29.7 0.84 4.55E-101 Box Plot
BLCA rs28538173 chr2:30778584 C/T cg12454169 chr2:30669597 LCLAT1 1.25 31.12 0.85 1.46E-106 Box Plot
BLCA rs2969379 chr2:99776686 G/A cg15544633 chr2:99771531 LIPT1;TSGA10 1.16 32.33 0.86 4.11E-111 Box Plot
BLCA rs2984615 chr1:156165317 G/C cg24450063 chr1:156163899 SLC25A44 1.17 29.7 0.84 4.55E-101 Box Plot
BLCA rs34252185 chr2:99737646 A/G cg15544633 chr2:99771531 LIPT1;TSGA10 1.18 32.97 0.86 1.58E-113 Box Plot
BLCA rs34383742 chr2:99723016 TA/T cg15544633 chr2:99771531 LIPT1;TSGA10 1.17 32.26 0.86 7.02E-111 Box Plot
BLCA rs34548643 chr13:100150907 GC/G cg25919922 chr13:100150906 NA 1.16 32.58 0.86 4.61E-112 Box Plot
BLCA rs34571056 chr5:13670295 GT/G cg27586797 chr5:13664584 NA -1.07 -29.54 -0.83 1.81E-100 Box Plot
BLCA rs34587513 chr13:100179080 TG/T cg25919922 chr13:100150906 NA 1.17 32.18 0.86 1.4E-110 Box Plot
BLCA rs34712338 chr13:100166166 TA/T cg25919922 chr13:100150906 NA 1.17 32.83 0.86 5.64E-113 Box Plot
BLCA rs34905640 chr2:30730513 C/CT cg12454169 chr2:30669597 LCLAT1 1.26 31.64 0.85 1.63E-108 Box Plot
BLCA rs34953488 chr2:30717955 CT/C cg12454169 chr2:30669597 LCLAT1 1.26 31.67 0.85 1.24E-108 Box Plot
BLCA rs35178664 chr8:91690752 A/G cg16814680 chr8:91681699 NA -1.17 -35.38 -0.88 2.71E-122 Box Plot